PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01376.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 228aa    MW: 25162.1 Da    PI: 4.8391
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01376.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.6e-18119169255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp + g  +r++lg+f  +e+Aa a+++a+ +++g
  Rsa1.0_01376.1_g00005.1 119 HYRGVRQRP-WGKFAAEIRDPAKFG--ARVWLGTFEKEEDAALAYDRAAFRMRG 169
                              8********.**********97654..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.9E-30118177IPR001471AP2/ERF domain
CDDcd000181.20E-31118178No hitNo description
PfamPF008473.2E-12119169IPR001471AP2/ERF domain
SMARTSM003809.6E-37119183IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22119179IPR016177DNA-binding domain
PROSITE profilePS5103223.38119177IPR001471AP2/ERF domain
PRINTSPR003677.0E-13120131IPR001471AP2/ERF domain
PRINTSPR003677.0E-13159179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MYGEGEMMAA TETEYALLES IRRHLLGGET ELQYSESTPS SCLTESTWGD LPLKENDSED  60
MLVYGVLNGA ACETSSPSSD LSCLSDFLDL EPSSKPSAVK TEPSENIAAV VPPEKGKKHY  120
RGVRQRPWGK FAAEIRDPAK FGARVWLGTF EKEEDAALAY DRAAFRMRGS RALLNFPWRV  180
NSGEPDPVRI PSKRSYTSSS SENGAQKRRR NGEDVASSEL QVKCEVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A4e-39118184470ATERF1
2gcc_A4e-39118184470ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834931e-115AC183493.1 Brassica oleracea Contig B, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114286.11e-127PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotO803387e-92EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLM4DLW41e-127M4DLW4_BRARP; Uncharacterized protein
STRINGBra017495.1-P1e-126(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.13e-86ethylene responsive element binding factor 2